.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "generated\examples\dro\plot_T1_mapping_vFATR.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_generated_examples_dro_plot_T1_mapping_vFATR.py>`
        to download the full example code or to run this example in your browser via Binder

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_generated_examples_dro_plot_T1_mapping_vFATR.py:


==================================
T1-mapping with variable TR and FA
==================================

5-dimensions dataset simulating MRI data collected fro T1-mapping using the technical of variable flip angles and repetition times. 

.. GENERATED FROM PYTHON SOURCE LINES 10-11

Gnerate synthetic data and extract coordinates and array.

.. GENERATED FROM PYTHON SOURCE LINES 11-19

.. code-block:: default

    import numpy as np
    from dbdicom import dro

    data = dro.T1_mapping_vFATR()
    dims = ('SliceLocation', 'FlipAngle', 'RepetitionTime')
    #coords = data.coords(dims)









.. GENERATED FROM PYTHON SOURCE LINES 20-21

Display the data at the smallest flip angle and repetition time

.. GENERATED FROM PYTHON SOURCE LINES 21-30

.. code-block:: default


    from dbdicom.extensions.matplotlib import plot_mosaic

    im0 = data.extract(FlipAngle=20, RepetitionTime=5.0)
    plot_mosaic(im0, zdim='SliceLocation', gridspacing=500) 


    # Choose the last image as a thumbnail for the gallery
    # sphinx_gallery_thumbnail_number = -1



.. image-sg:: /generated/examples/dro/images/sphx_glr_plot_T1_mapping_vFATR_001.png
   :alt: plot T1 mapping vFATR
   :srcset: /generated/examples/dro/images/sphx_glr_plot_T1_mapping_vFATR_001.png
   :class: sphx-glr-single-img






.. rst-class:: sphx-glr-timing

   **Total running time of the script:** ( 0 minutes  1.379 seconds)


.. _sphx_glr_download_generated_examples_dro_plot_T1_mapping_vFATR.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example


    .. container:: binder-badge

      .. image:: images/binder_badge_logo.svg
        :target: https://mybinder.org/v2/gh/QIB-Sheffield/dbdicom/main?urlpath=lab/tree/notebooks/generated/examples/dro/plot_T1_mapping_vFATR.ipynb
        :alt: Launch binder
        :width: 150 px



    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_T1_mapping_vFATR.py <plot_T1_mapping_vFATR.py>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_T1_mapping_vFATR.ipynb <plot_T1_mapping_vFATR.ipynb>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_