Reference

This reference manual details all functions included in mdreg, describing what they are and what they do.

• Main functions
  • mdreg.fit
• skimage
  • mdreg.skimage.coreg
  • mdreg.skimage.transform
  • mdreg.skimage.coreg_series
  • mdreg.skimage.transform_series
  • mdreg.skimage.defaults
• ants
  • mdreg.ants.coreg
  • mdreg.ants.transform
  • mdreg.ants.coreg_series
  • mdreg.ants.transform_series
  • mdreg.ants.defaults
• elastix
  • mdreg.elastix.coreg
  • mdreg.elastix.transform
  • mdreg.elastix.coreg_series
  • mdreg.elastix.transform_series
  • mdreg.elastix.defaults
• Signal models
  • Signal models
  • Signal models - initializers
  • Fitting signal models
• Plotting
  • mdreg.plot.animation
  • mdreg.plot.series
  • mdreg.plot.par
• Utilities
  • mdreg.fetch
  • mdreg.fetch_zarr
  • mdreg.fit_pixels
  • mdreg.defo_jacobian_2d
  • mdreg.defo_norm